Dear khushi_mantra,
Greetings from team eBay!
With eBay now managing payments, you do not need to worry about paying the eBay fees. These would be automatically deducted by eBay from the funds available in your eBay account for the orders received by you before making the payout.
If the available funds are insufficient, then the amount would be automatically deducted from the credit/debit card that you had put on file while syncing your eBay and Payoneer account.
However if you still want to make the payment and your account does not have any funds, then under the "Payments Tab" you would see the notification like this "Your funds are in the negative. We'll deduct this from your bank account or card on file. Or, you can pay it off now. Pay now". You need to click on the "Pay Now" button and procee with the payment. Remember you need to have a internationally accepted credit or debit card so the currency conversion.
Should you need more help then please write to Indiacbtcollections@ebay.com and our team would revert to you.
Regards,
eBay INCBT Team